cntl_run.csh: Runs the Cntlmat and Grwinven program. Sets the required GCNTL file name depending on script settings, as explained in Section 4.4.11, “Setup projection and control scenarios”.

make_invdir.csh: Sets the INVNAME1 and INVNAME2 settings that Smkinven uses for creating the map-formatted inventory intermediate files.

metcombine.csh: Runs the utility program Metcombine to combine the METCRO2D* and METCRO3D* files in the $METDAT directory. This script creates files named METCOMBO* in the $METDAT directory.

movelog.csh: Deletes or renames the log files, depending on the AUTO_DELETE_LOG setting.

qa_run.csh: Runs the Smkreport program

smk_run.csh: Runs the following SMOKE programs: Smkinven, Rawbio (for both winter and summer runs), Normbeis3, Spcmat, Grdmat, Metscan, Temporal, Tmpbio, Tmpbeis3, Smkmerge, Mrggrid, and Smk2emis.

Creates PTMPLIST file for Elevpoint by assuming all files with the name pattern ptmp*$PSCEN*ncf in the $SMKDAT/run_$PSCEN/* directories should be included in the file.

Creates the METLIST and RADLIST files for Tmpbio by listing $MET_FILE1 to METLIST and $MET_FILE2 to RADLIST. MET_FILE1 and MET_FILE2 are set in the Assigns file.

Determines which speciation matrix is needed for Smkmerge, based on the requested units. If the MRG_GRDOUT_UNIT setting contains the string “mole” then the molar speciation matrix and molar gridded, hourly biogenic emissions are set to be used by Smkmerge.

Creates the FILELIST file for Mrggrid from the MRGFILES setting in the calling merge run script.